Spitzer IRS Custom Extraction (SPICE)

Purpose and Description

The Spitzer IRS Custom Extraction (SPICE) software provides a JAVA-based tool that allows the user to interactively extract Spitzer Infrared Spectrograph (IRS) spectra. The Spitzer data reduction pipeline provides default extractions by assuming a point source and using automated searching techniques. The extraction is done on both the individual BCDs and the coadded BCDs. However, many observing programs require further refinement to meet their science goals.

SPICE is designed to allow the user to:

  • visualize the extraction performed by the SSC pipeline
  • examine features at known wavelengths in the 2D dspersed image
  • extract multiple targets along the slit
  • extract local sky spectra along the slit
  • re-extract target spectra after sky subtraction on the 2D dispersed image
  • re-extract target spectra after interpolation over e.g. bad pixels
  • extract spectra from multiple frames in Batch Mode

Downloading and Installing the Software

Manual release (07.23.2008): The latest version of the SPICE manual (pdf) has been released.

Update (04.16.2008): The LH spectral extraction algorithm and corresponding flux calibration has been updated for S17.2 pipeline-processed data. Please see the IRS Pipeline History Log for a detailed description of the changes. Most notably, the flux values (in e/sec) for LH delivered by the Extract module (Regular or Optimal) are now divided by the height (measured along the spectrum in pixels) of the extraction window, as set by the wavsamp wavelength calibration file. This change improves the order matching in *_extract.tbl spectra, but does not have much effect on the final, flux calibrated, *_spect.tbl spectra delivered by Tune. These updates do not pertain to any of the other modules. Note: This is the final update for which Solaris 8 will be supported. Future updates will support only Solaris 10.

Previous SPICE Updates

Follow these instructions for Downloading and Installing the Software.


Upgrading SPICE

All updates to SPICE are distributed via the auto-update function of the GUI. To use the auto-update, SPICE needs to be able to connect to the internet. The net status is displayed at the bottom of the GUI. If you do not see Net Up, you may need to address the problem. The GUI shares its update functionality with Spitzer's SPOT; please see the SPOT user's guide for more information.

SPICE will automatically download any available updates whenever it is restarted. To check for updates without re-starting SPICE, go to the Options menu on the task bar and toggle Use Automatic Spice Version Update off and back on again.

Updates will provide new functionality and cal files as they are developed. Existing files may be replaced if new versions are distributed with the same name, but other files will not be deleted. So, if you modify any files distributed with SPICE, we recommend changing their name to protect them from being overwritten.


Running SPICE

The SPICE User's Guide (available in pdf format or in the GUI) contains a walkthrough of a basic reduction. See also the brief introduction on how to run SPICE and the SPICE examples page for examples of how to carry out common tasks with point source extraction in SPICE. The SPICE software has been developed for use on Solaris 8+, Linux RedHat and Mac OSX10.3+ platforms. It should work on other flavours of Linux, but this has not been extensively tested. If you are successful in running this software on any flavour of Linux other than RedHat, please email us at the Spitzer Helpdesk to let us know so we can add it to the list of tested platforms. In the event that bugs are encountered, please follow the instructions under report bugs.


Description of Modules


User's Guides

All of the documentation for SPICE is now included in the GUI Help system (on the top menu bar in the GUI, click on Help > Overview...).

The SPICE User's Guide is also available in pdf format.

See the User's Guide above, plus Running SPICE and SPICE Examples pages for overviews of how to carry out simple extractions with SPICE.

Supporting Documentation



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This file was last modified on Wed Jul 23 12:43:57 PDT 2008.

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